1A82 Biotin Biosynthesis date Mar 31, 1998
title Dethiobiotin Synthetase From Escherichia Coli, Complex With Atp And Diaminopelargonic Acid
authors H.Kaeck, K.J.Gibson, Y.Lindqvist, G.Schneider
compound source
Molecule: Dethiobiotin Synthetase
Chain: A
Ec: 6.3.3.3
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Cellular_location: Cytoplasm
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_cellular_location: Cytoplasm
Expression_system_vector_type: Plasmid
Expression_system_gene: Biod
symmetry Space Group: C 1 2 1
R_factor 0.190 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.900 47.900 60.900 90.00 106.50 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand ATP, DNN, MG enzyme Ligase E.C.6.3.3.3 BRENDA
related structures by homologous chain: 1DAM
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSnapshot of a phosphorylated substrate intermediate by kinetic crystallography., Kack H, Gibson KJ, Lindqvist Y, Schneider G, Proc Natl Acad Sci U S A 1998 May 12;95(10):5495-500. PMID:9576910
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (1a82.pdb1.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 1A82
  • CSU: Contacts of Structural Units for 1A82
  • Likely Quarternary Molecular Structure file(s) for 1A82
  • Retrieve 1A82 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1A82 from S2C, [Save to disk]
  • View 1A82 in 3D
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  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1A82, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1a82__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1a82_A] [1a82]
  • SWISS-PROT database: [P13000]
  • Domain organization of [BIOD_ECOLI] by SWISSPFAM
  • Other resources with information on 1A82
  • Community annotation for 1A82 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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