1A8H Aminoacyl-Trna Synthetase date Mar 26, 1998
title Methionyl-Trna Synthetase From Thermus Thermophilus
authors I.Sugiura, O.Nureki, Y.Ugaji, S.Kuwabara, B.Lober, R.Giege, D.Mora S.Yokoyama, M.Konno, Riken Structural Genomicsproteomics Ini (Rsgi)
compound source
Molecule: Methionyl-Trna Synthetase
Chain: A
Synonym: Metrs
Ec: 6.1.1.10
Other_details: Zn In Zn Finger
 Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8
symmetry Space Group: P 21 21 21
R_factor 0.205 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.020 82.470 116.920 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand ZN enzyme Ligase E.C.6.1.1.10 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe 2.0 A crystal structure of Thermus thermophilus methionyl-tRNA synthetase reveals two RNA-binding modules., Sugiura I, Nureki O, Ugaji-Yoshikawa Y, Kuwabara S, Shimada A, Tateno M, Lorber B, Giege R, Moras D, Yokoyama S, Konno M, Structure. 2000 Feb 15;8(2):197-208. PMID:10673435
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (1a8h.pdb1.gz) 84 Kb
  • LPC: Ligand-Protein Contacts for 1A8H
  • CSU: Contacts of Structural Units for 1A8H
  • Likely Quarternary Molecular Structure file(s) for 1A8H
  • Retrieve 1A8H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1A8H from S2C, [Save to disk]
    • View 1A8H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1A8H
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1A8H, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1a8h_2, region 1-348 [Jmol] [rasmolscript] [script source]
        - Domain d1a8h_1, region 349-500 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1a8h] [1a8h_A]
  • SWISS-PROT database: [P23395]
  • Domain organization of [SYM_THET8] by SWISSPFAM
    • Other resources with information on 1A8H
  • Community annotation for 1A8H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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  • Images from IMB Jena Image Library of Biological Macromolecules.

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