1AAB Dna-Binding date Oct 28, 1995
title Nmr Structure Of Rat Hmg1 Hmga Fragment
authors C.H.Hardman, R.W.Broadhurst, A.R.C.Raine, K.D.Grasser, J.O.Thoma E.D.Laue
compound source
Molecule: High Mobility Group Protein
Chain: A
Fragment: Fragment A (Residues 1 - 83)
Synonym: Hmga Dna-Binding Hmg-Box Domain A Of Rat Hmg1
Engineered: Yes
Mutation: Yes
 Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Strain: Sprague-Dawley
Tissue: Liver
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: De3
Expression_system_plasmid: Pt7-Hmgacs
methodSolution NMR
related structures by homologous chain: 1J3X
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the A-domain of HMG1 and its interaction with DNA as studied by heteronuclear three- and four-dimensional NMR spectroscopy., Hardman CH, Broadhurst RW, Raine AR, Grasser KD, Thomas JO, Laue ED, Biochemistry 1995 Dec 26;34(51):16596-607. PMID:8527432
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (750 Kb) [Save to disk]
  • Biological Unit Coordinates (1aab.pdb1.gz) 23 Kb
  • CSU: Contacts of Structural Units for 1AAB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1AAB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1AAB from S2C, [Save to disk]
    • View 1AAB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1AAB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1AAB, from MSDmotif at EBI
  • Genome occurence of 1AAB's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1aab__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1aab_A] [1aab]
  • SWISS-PROT database: [P63159]
  • Domain organization of [HMGB1_RAT] by SWISSPFAM
  • Domain found in 1AAB: [HMG ] by SMART
    • Other resources with information on 1AAB
  • Community annotation for 1AAB at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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