1AB4 Topoisomerase date Feb 03, 1997
title 59kda Fragment Of Gyrase A From E. Coli
authors J.H.M.Cabral, A.Maxwell, R.C.Liddington
compound source
Molecule: Gyrase A
Chain: A
Fragment: 59kda Fragment
Ec: 5.99.1.3
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 41
R_factor 0.226 R_Free 0.310
crystal
cell
length a length b length c angle alpha angle beta angle gamma
119.630 119.630 94.980 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand
enzyme Isomerase E.C.5.99.1.3 BRENDA
related structures by homologous chain: 1X75
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the breakage-reunion domain of DNA gyrase., Morais Cabral JH, Jackson AP, Smith CV, Shikotra N, Maxwell A, Liddington RC, Nature 1997 Aug 28;388(6645):903-6. PMID:9278055
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (1ab4.pdb1.gz) 140 Kb
  • CSU: Contacts of Structural Units for 1AB4
  • Likely Quarternary Molecular Structure file(s) for 1AB4
  • Structure Factors (295 Kb)
  • Retrieve 1AB4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1AB4 from S2C, [Save to disk]
  • Re-refined 1ab4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1AB4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1AB4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1AB4, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ab4__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ab4_A] [1ab4]
  • SWISS-PROT database: [P0AES4]
  • Domain organization of [GYRA_ECOLI] by SWISSPFAM
  • Domain found in 1AB4: [TOP4c ] by SMART
  • Other resources with information on 1AB4
  • Community annotation for 1AB4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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