1ADB Oxidoreductase (Nad(A)-Choh(D)) date Dec 13, 1993
title Crystallographic Studies Of Isosteric Nad Analogues Bound To Dehydrogenase: Specificity And Substrate Binding In Two Ter Complexes
authors H.Li, W.A.Hallows, J.S.Punzi, K.W.Pankiewicz, K.A.Watanabe, B.M.G
compound source
Molecule: Alcohol Dehydrogenase
Chain: A, B
Ec: 1.1.1.1
Engineered: Yes
 Organism_scientific: Equus Caballus
Organism_common: Horse
Organism_taxid: 9796
symmetry Space Group: P 1
R_factor 0.180 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.100 44.700 93.500 103.30 87.90 70.40
method X-Ray Diffractionresolution 2.40 Å
ligand CND, EOH, ZN enzyme Oxidoreductase E.C.1.1.1.1 BRENDA
related structures by homologous chain: 1HTB, 8ADH
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystallographic studies of isosteric NAD analogues bound to alcohol dehydrogenase: specificity and substrate binding in two ternary complexes., Li H, Hallows WH, Punzi JS, Pankiewicz KW, Watanabe KA, Goldstein BM, Biochemistry 1994 Oct 4;33(39):11734-44. PMID:7918390
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (146 Kb) [Save to disk]
  • Biological Unit Coordinates (1adb.pdb1.gz) 141 Kb
  • LPC: Ligand-Protein Contacts for 1ADB
  • CSU: Contacts of Structural Units for 1ADB
  • Likely Quarternary Molecular Structure file(s) for 1ADB
  • Retrieve 1ADB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ADB from S2C, [Save to disk]
    • View 1ADB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1ADB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ADB, from MSDmotif at EBI
  • Genome occurence of 1ADB's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1adba1, region A:1-163,A:340-374 [Jmol] [rasmolscript] [script source]
        - Domain d1adba2, region A:164-339 [Jmol] [rasmolscript] [script source]
        - Domain d1adbb1, region B:1-163,B:340-374 [Jmol] [rasmolscript] [script source]
        - Domain d1adbb2, region B:164-339 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1adb_B] [1adb_A] [1adb]
  • SWISS-PROT database: [P00327]
  • Domain organization of [ADH1E_HORSE] by SWISSPFAM
    • Other resources with information on 1ADB
  • Community annotation for 1ADB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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