1ADD Hydrolase(Acting In Cyclicamidines) date Dec 22, 1992
title A Pre-Transition State Mimic Of An Enzyme: X-Ray Structure O Adenosine Deaminase With Bound 1-Deaza-Adenosine And Zinc-A Water
authors D.K.Wilson, F.A.Quiocho
compound source
Molecule: Adenosine Deaminase
Chain: A
Ec: 3.5.4.4
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.181 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.390 94.280 73.020 90.00 127.05 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand 1DA, ZN BindingDB enzyme Hydrolase E.C.3.5.4.4 BRENDA
related structures by homologous chain: 1FKW, 2ADA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA pre-transition-state mimic of an enzyme: X-ray structure of adenosine deaminase with bound 1-deazaadenosine and zinc-activated water., Wilson DK, Quiocho FA, Biochemistry 1993 Feb 23;32(7):1689-94. PMID:8439534
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (1add.pdb1.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 1ADD
  • CSU: Contacts of Structural Units for 1ADD
  • Likely Quarternary Molecular Structure file(s) for 1ADD
  • Retrieve 1ADD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ADD from S2C, [Save to disk]
    • View 1ADD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1ADD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ADD, from MSDmotif at EBI
  • Genome occurence of 1ADD's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1add__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1add_A] [1add]
  • SWISS-PROT database: [P03958]
  • Domain organization of [ADA_MOUSE] by SWISSPFAM
    • Other resources with information on 1ADD
  • Community annotation for 1ADD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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