1AGQ	Growth Factor	date	Mar 25, 1997
title	Glial Cell-Derived Neurotrophic Factor From Rat
authors	C.Eigenbrot, N.Gerber
compound		source
Molecule: Glial Cell-Derived Neurotrophic Factor Chain: A, B, C, D Synonym: Gdnf Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Organ: Brain Cell: Glia Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1 21 1	R_factor 0.203 R_Free 0.235
crystal cell	length a length b length c angle alpha angle beta angle gamma 67.850 67.550 71.400 90.00 115.94 90.00
method	X-Ray Diffraction	resolution	1.90 Å
note	1AGQ is a representative structure
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	X-ray structure of glial cell-derived neurotrophic factor at 1.9 A resolution and implications for receptor binding., Eigenbrot C, Gerber N, Nat Struct Biol 1997 Jun;4(6):435-8. PMID:9187648

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk] Biological Unit Coordinates (1agq.pdb1.gz) 67 Kb CSU: Contacts of Structural Units for 1AGQ Likely Quarternary Molecular Structure file(s) for 1AGQ Retrieve 1AGQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1AGQ from S2C, [Save to disk]

View 1AGQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1AGQ

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1AGQ, from MSDmotif at EBI Genome occurence of 1AGQ's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1agqa_, region A [Jmol] [rasmolscript] [script source]     - Domain d1agqb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1agqc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1agqd_, region D [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1agq_B] [1agq] [1agq_D] [1agq_C] [1agq_A] SWISS-PROT database: [Q07731] Domain organization of [GDNF_RAT] by SWISSPFAM Domain found in 1AGQ: [TGFB ] by SMART

Other resources with information on 1AGQ

Community annotation for 1AGQ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---