1AHD Dna Binding Protein Dna date Apr 02, 1993
title Determination Of The Nmr Solution Structure Of An Antennaped Homeodomain-Dna Complex
authors M.Billeter, Y.Q.Qian, G.Otting, M.Muller, W.J.Gehring, K.Wuthrich
compound source
Molecule: Dna (5'-D(Gpapapapgpcpcpaptptpapgpap
Chain: A
Engineered: Yes
Mutation: Yes
 Synthetic: Yes

Molecule: Dna (5'-D(Cptpcptpapaptpgpgpcptptptp
Chain: B
Engineered: Yes
Synthetic: Yes

Molecule: Homeotic Protein Antennapedia
Chain: P
Engineered: Yes
Organism_scientific: Drosophila Subobscura
Organism_common: Fruit Fly
Organism_taxid: 7241
Organ: Fruit
Gene: Antp
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
P


Primary referenceDetermination of the nuclear magnetic resonance solution structure of an Antennapedia homeodomain-DNA complex., Billeter M, Qian YQ, Otting G, Muller M, Gehring W, Wuthrich K, J Mol Biol 1993 Dec 20;234(4):1084-93. PMID:7903398
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (632 Kb) [Save to disk]
  • Biological Unit Coordinates (1ahd.pdb1.gz) 40 Kb
  • CSU: Contacts of Structural Units for 1AHD
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1AHD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1AHD from S2C, [Save to disk]
    • View 1AHD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1AHD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1AHD, from MSDmotif at EBI
  • Genome occurence of 1AHD's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ahdp_, region P [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ahd_P] [1ahd_B] [1ahd] [1ahd_A]
  • SWISS-PROT database: [P02833]
  • Domain organization of [ANTP_DROME] by SWISSPFAM
  • Domain found in 1AHD: [HOX ] by SMART
    • Other resources with information on 1AHD
  • Community annotation for 1AHD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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