1AN9 Oxidoreductase date Jun 28, 1997
title D-Amino Acid Oxidase Complex With O-Aminobenzoate
authors R.Miura, C.Setoyama, Y.Nishina, K.Shiga, H.Mizutani, I.Miyahara, K
compound source
Molecule: D-Amino Acid Oxidase
Chain: A, B
Ec: 1.4.3.3
Engineered: Yes
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Pet
Expression_system_vector_type: Pet
Expression_system_plasmid: Pet System
symmetry Space Group: P 21 21 21
R_factor 0.201 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
109.310 92.580 71.320 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand BE2, FAD enzyme Oxidoreductase E.C.1.4.3.3 BRENDA
related structures by homologous chain: 1EVI, 1VE9
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural and mechanistic studies on D-amino acid oxidase x substrate complex: implications of the crystal structure of enzyme x substrate analog complex., Miura R, Setoyama C, Nishina Y, Shiga K, Mizutani H, Miyahara I, Hirotsu K, J Biochem (Tokyo) 1997 Oct;122(4):825-33. PMID:9399588
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (1an9.pdb1.gz) 113 Kb
  • LPC: Ligand-Protein Contacts for 1AN9
  • CSU: Contacts of Structural Units for 1AN9
  • Likely Quarternary Molecular Structure file(s) for 1AN9
  • Retrieve 1AN9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1AN9 from S2C, [Save to disk]
  • View 1AN9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1AN9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1AN9, from MSDmotif at EBI
  • Genome occurence of 1AN9's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1an9a1, region A:1-194,A:288-340 [Jmol] [rasmolscript] [script source]
        - Domain d1an9a2, region A:195-287 [Jmol] [rasmolscript] [script source]
        - Domain d1an9b1, region B:1-194,B:288-340 [Jmol] [rasmolscript] [script source]
        - Domain d1an9b2, region B:195-287 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1an9_A] [1an9] [1an9_B]
  • SWISS-PROT database: [P00371]
  • Domain organization of [OXDA_PIG] by SWISSPFAM
  • Other resources with information on 1AN9
  • Community annotation for 1AN9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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