1AP6	Oxidoreductase	date	Jul 24, 1997
title	Tyr34->Phe Mutant Of Human Mitochondrial Manganese Superoxid Dismutase
authors	Y.Guan, J.A.Tainer
compound		source
Molecule: Manganese Superoxide Dismutase Chain: A, B Ec: 1.15.1.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Organ: Kidney Organelle: Mitochondria Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Sodasodb
symmetry	Space Group: P 61 2 2	R_factor 0.182 R_Free 0.236
crystal cell	length a length b length c angle alpha angle beta angle gamma 80.900 80.900 242.500 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	MN	enzyme	Oxidoreductase E.C.1.15.1.1 BRENDA
related structures	by homologous chain: 1LUV, 1SZX
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structure of Y34F mutant human mitochondrial manganese superoxide dismutase and the functional role of tyrosine 34., Guan Y, Hickey MJ, Borgstahl GE, Hallewell RA, Lepock JR, O'Connor D, Hsieh Y, Nick HS, Silverman DN, Tainer JA, Biochemistry 1998 Apr 7;37(14):4722-30. PMID:9537987

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk] Biological Unit Coordinates (1ap6.pdb1.gz) 139 Kb LPC: Ligand-Protein Contacts for 1AP6 CSU: Contacts of Structural Units for 1AP6 Likely Quarternary Molecular Structure file(s) for 1AP6 Retrieve 1AP6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1AP6 from S2C, [Save to disk]

View 1AP6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1AP6

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1AP6, from MSDmotif at EBI Genome occurence of 1AP6's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ap6a1, region A:1-83 [Jmol] [rasmolscript] [script source]     - Domain d1ap6a2, region A:84-198 [Jmol] [rasmolscript] [script source]     - Domain d1ap6b1, region B:1-83 [Jmol] [rasmolscript] [script source]     - Domain d1ap6b2, region B:84-198 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ap6_A] [1ap6] [1ap6_B] SWISS-PROT database: [P04179] Domain organization of [SODM_HUMAN] by SWISSPFAM

Other resources with information on 1AP6

Community annotation for 1AP6 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---