1AUN Antifungal Protein date Aug 29, 1997
title Pathogenesis-Related Protein 5d From Nicotiana Tabacum
authors H.Koiwa, H.Kato, T.Nakatsu, J.Oda, Y.Yamada, F.Sato
compound source
Molecule: Pr-5d
Chain: A
Synonym: Osmotin-Like Protein
 Organism_scientific: Nicotiana Tabacum
Organism_common: Common Tobacco
Organism_taxid: 4097
Strain: Samsun Nn
Cell: Cultured Cell
Cellular_location: Vacuole
symmetry Space Group: C 1 2 1
R_factor 0.169 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.140 63.690 45.610 90.00 107.18 90.00
method X-Ray Diffractionresolution 1.80 Å
related structures by homologous chain: 1PCV
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of tobacco PR-5d protein at 1.8 A resolution reveals a conserved acidic cleft structure in antifungal thaumatin-like proteins., Koiwa H, Kato H, Nakatsu T, Oda J, Yamada Y, Sato F, J Mol Biol 1999 Mar 5;286(4):1137-45. PMID:10047487
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (1aun.pdb1.gz) 34 Kb
  • CSU: Contacts of Structural Units for 1AUN
  • Likely Quarternary Molecular Structure file(s) for 1AUN
  • Structure Factors (158 Kb)
  • Retrieve 1AUN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1AUN from S2C, [Save to disk]
  • Re-refined 1aun structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1AUN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1AUN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1AUN, from MSDmotif at EBI
  • Genome occurence of 1AUN's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1aun__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1aun_A] [1aun]
  • SWISS-PROT database: [P25871]
  • Domain organization of [OLPA_TOBAC] by SWISSPFAM
  • Domain found in 1AUN: [THN ] by SMART
    • Other resources with information on 1AUN
  • Community annotation for 1AUN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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