1AUP	Oxidoreductase	date	Sep 01, 1997
title	Glutamate Dehydrogenase
authors	P.J.Baker, M.L.Waugh, T.J.Stillman, A.P.Turnbull, D.W.Rice
compound		source
Molecule: Nad-Specific Glutamate Dehydrogenase Chain: A Ec: 1.4.1.2 Engineered: Yes Mutation: Yes		Organism_scientific: Clostridium Symbiosum Organism_taxid: 1512 Gene: Gdh Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Q100 Expression_system_vector_type: Bacteriophage Expression_system_vector: M13mp19 Expression_system_plasmid: Ptac85ptac44 Expression_system_gene: Gdh
symmetry	Space Group: H 3 2	R_factor 0.190 R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 162.900 162.900 100.700 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand		enzyme	Oxidoreductase E.C.1.4.1.2 BRENDA
related structures	by homologous chain: 1K89
Gene Ontology	Chain Function Process Component A
Primary reference	Determinants of substrate specificity in the superfamily of amino acid dehydrogenases., Baker PJ, Waugh ML, Wang XG, Stillman TJ, Turnbull AP, Engel PC, Rice DW, Biochemistry 1997 Dec 23;36(51):16109-15. PMID:9405044

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk] Biological Unit Coordinates (1aup.pdb1.gz) 384 Kb CSU: Contacts of Structural Units for 1AUP Likely Quarternary Molecular Structure file(s) for 1AUP Retrieve 1AUP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1AUP from S2C, [Save to disk]

View 1AUP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1AUP

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1AUP, from MSDmotif at EBI Genome occurence of 1AUP's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1aup_2, region 1-192 [Jmol] [rasmolscript] [script source]     - Domain d1aup_1, region 205-449 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1aup] [1aup_A] SWISS-PROT database: [P24295] Domain organization of [DHE2_CLOSY] by SWISSPFAM Domain found in 1AUP: [ELFV_dehydrog ] by SMART

Other resources with information on 1AUP

Community annotation for 1AUP at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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