1AVM Oxidoreductase date Sep 17, 1997
title The Cambialistic Superoxide Dismutase (Fe-Sod) Of P. Sherman Coordinated By Azide
authors M.Schmidt, F.Parak
compound source
Molecule: Superoxide Dismutase
Chain: A, B
Synonym: Sod
Ec: 1.15.1.1
Engineered: Yes
 Organism_scientific: Propionibacterium Freudenreichii Subsp Shermanii;
Organism_taxid: 1752
Strain: Pz3
Other_details: German Collection Of Microorganisms (Dsm)
symmetry Space Group: C 2 2 21
R_factor 0.171 R_Free 0.198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.680 85.420 108.760 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.55 Å
ligand AZI, FE enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
related structures by homologous chain: 1BS3, 1BSM
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • superoxide dismutase activit...


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (1avm.pdb1.gz) 142 Kb
  • LPC: Ligand-Protein Contacts for 1AVM
  • CSU: Contacts of Structural Units for 1AVM
  • Likely Quarternary Molecular Structure file(s) for 1AVM
  • Retrieve 1AVM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1AVM from S2C, [Save to disk]
    • View 1AVM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1AVM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1AVM, from MSDmotif at EBI
  • Genome occurence of 1AVM's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1avma1, region A:1-86 [Jmol] [rasmolscript] [script source]
        - Domain d1avma2, region A:87-201 [Jmol] [rasmolscript] [script source]
        - Domain d1avmb1, region B:1-86 [Jmol] [rasmolscript] [script source]
        - Domain d1avmb2, region B:87-201 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1avm] [1avm_B] [1avm_A]
  • SWISS-PROT database: [P80293]
  • Domain organization of [SODM_PROFR] by SWISSPFAM
    • Other resources with information on 1AVM
  • Community annotation for 1AVM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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