1AWV Complex (Isomerase Peptide) date Oct 05, 1997
title Cypa Complexed With Hvgpia
authors F.F.Vajdos
compound source
Molecule: Cyclophilin A
Chain: A, B, C, D, E, F
Ec: 5.2.1.8
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cellular_location: Cytoplasm
Gene: Cyclophilin
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_gene: Cyclophilin

Molecule: Peptide From The Hiv-1 Capsid Protein
Chain: G, H, I, J, K, L
Engineered: Yes

symmetry Space Group: P 41
R_factor 0.358 R_Free 0.460
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.000 74.000 190.400 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.34 Å
ligand
enzyme Isomerase E.C.5.2.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceCrystal structure of cyclophilin A complexed with a binding site peptide from the HIV-1 capsid protein., Vajdos FF, Yoo S, Houseweart M, Sundquist WI, Hill CP, Protein Sci 1997 Nov;6(11):2297-307. PMID:9385632
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (161 Kb) [Save to disk]
  • Biological Unit Coordinates (1awv.pdb1.gz) 28 Kb
  • Biological Unit Coordinates (1awv.pdb2.gz) 29 Kb
  • Biological Unit Coordinates (1awv.pdb3.gz) 28 Kb
  • Biological Unit Coordinates (1awv.pdb4.gz) 28 Kb
  • Biological Unit Coordinates (1awv.pdb5.gz) 28 Kb
  • Biological Unit Coordinates (1awv.pdb6.gz) 28 Kb
  • CSU: Contacts of Structural Units for 1AWV
  • Likely Quarternary Molecular Structure file(s) for 1AWV
  • Structure Factors (666 Kb)
  • Retrieve 1AWV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1AWV from S2C, [Save to disk]
  • Re-refined 1awv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1AWV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1AWV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1AWV, from MSDmotif at EBI
  • Genome occurence of 1AWV's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1awva_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1awvb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1awvc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1awvd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1awve_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1awvf_, region F [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1awv_I] [1awv_C] [1awv] [1awv_G] [1awv_A] [1awv_H] [1awv_B] [1awv_F] [1awv_K] [1awv_D] [1awv_L] [1awv_E] [1awv_J]
  • SWISS-PROT database: [P62937]
  • Domain organization of [PPIA_HUMAN] by SWISSPFAM
  • Other resources with information on 1AWV
  • Community annotation for 1AWV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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