1B00 Gene Regulation date Nov 15, 1998
title Phob Receiver Domain From Escherichia Coli
authors M.Sola, F.X.Gomis-Ruth, L.Serrano, A.Gonzalez, M.Coll
compound source
Molecule: Phosphate Regulon Transcriptional Regulatory Prot
Chain: A, B
Fragment: Receiver Domain
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Xl1-Blue
Cellular_location: Cytoplasm
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_cellular_location: Cytoplasm
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbat-4
symmetry Space Group: P 21 21 21
R_factor 0.210 R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
34.110 60.420 119.970 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.88 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThree-dimensional crystal structure of the transcription factor PhoB receiver domain., Sola M, Gomis-Ruth FX, Serrano L, Gonzalez A, Coll M, J Mol Biol 1999 Jan 15;285(2):675-87. PMID:9878437
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (1b00.pdb1.gz) 22 Kb
  • Biological Unit Coordinates (1b00.pdb2.gz) 22 Kb
  • CSU: Contacts of Structural Units for 1B00
  • Likely Quarternary Molecular Structure file(s) for 1B00
  • Retrieve 1B00 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1B00 from S2C, [Save to disk]
  • View 1B00 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1B00
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1B00, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1b00a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1b00b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1b00_A] [1b00] [1b00_B]
  • SWISS-PROT database: [P0AFJ5]
  • Domain organization of [PHOB_ECOLI] by SWISSPFAM
  • Domain found in 1B00: [REC ] by SMART
  • Other resources with information on 1B00
  • Community annotation for 1B00 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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