1B02 Transferase date Nov 16, 1998
title Crystal Structure Of Thymidylate Synthase A From Bacillus Su
authors K.M.Fox, F.Maley, A.Garibian, L.Changchien, P.Vanroey
compound source
Molecule: Protein (Thymidylate Synthase)
Chain: A
Ec: 2.1.1.45
Engineered: Yes
Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Strain: 168
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5alpha
Expression_system_plasmid: Pet17xb
symmetry Space Group: P 21 21 21
R_factor 0.194 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.570 105.010 117.260 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand C2F, UFP enzyme Transferase E.C.2.1.1.45 BRENDA
related structures by homologous chain: 1BKO, 1BSP
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of thymidylate synthase A from Bacillus subtilis., Fox KM, Maley F, Garibian A, Changchien LM, Van Roey P, Protein Sci 1999 Mar;8(3):538-44. PMID:10091656
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (1b02.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 1B02
  • CSU: Contacts of Structural Units for 1B02
  • Likely Quarternary Molecular Structure file(s) for 1B02
  • Structure Factors (182 Kb)
  • Retrieve 1B02 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1B02 from S2C, [Save to disk]
  • Re-refined 1b02 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1B02 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1B02
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1B02, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1b02a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1b02_A] [1b02]
  • SWISS-PROT database: [P42326]
  • Domain organization of [TYSY1_BACSU] by SWISSPFAM
  • Other resources with information on 1B02
  • Community annotation for 1B02 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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