1B06	Oxidoreductase	date	Nov 16, 1998
title	Superoxide Dismutase From Sulfolobus Acidocaldarius
authors	S.Knapp, S.Kardinahl, H.Niklas, G.Tibbelin, G.Schafer, R.Ladenste
compound		source
Molecule: Protein (Superoxide Dismutase) Chain: A, B, C, D, E, F Ec: 1.15.1.1		Organism_scientific: Sulfolobus Acidocaldarius Organism_taxid: 330779 Strain: Dsm 639 Atcc: Dsm 639 Collection: Dsm 639 Cellular_location: Cytosol Other_details: German Collection Of Microorganisms
symmetry	Space Group: C 1 2 1	R_factor 0.174 R_Free 0.223
crystal cell	length a length b length c angle alpha angle beta angle gamma 168.100 91.300 85.700 90.00 91.40 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	FE	enzyme	Oxidoreductase E.C.1.15.1.1 BRENDA
related structures	by homologous chain: 1WB7
Gene Ontology	Chain Function Process Component F, A, D, C, E, B superoxide dismutase activit...
Primary reference	Refined crystal structure of a superoxide dismutase from the hyperthermophilic archaeon Sulfolobus acidocaldarius at 2.2 A resolution., Knapp S, Kardinahl S, Hellgren N, Tibbelin G, Schafer G, Ladenstein R, J Mol Biol 1999 Jan 15;285(2):689-702. PMID:9878438

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (211 Kb) [Save to disk] Biological Unit Coordinates (1b06.pdb1.gz) 138 Kb Biological Unit Coordinates (1b06.pdb2.gz) 138 Kb LPC: Ligand-Protein Contacts for 1B06 CSU: Contacts of Structural Units for 1B06 Likely Quarternary Molecular Structure file(s) for 1B06 Retrieve 1B06 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1B06 from S2C, [Save to disk]

View 1B06 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1B06

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1B06, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1b06a1, region A:3-92 [Jmol] [rasmolscript] [script source]     - Domain d1b06a2, region A:93-210 [Jmol] [rasmolscript] [script source]     - Domain d1b06b1, region B:3-92 [Jmol] [rasmolscript] [script source]     - Domain d1b06b2, region B:93-210 [Jmol] [rasmolscript] [script source]     - Domain d1b06c1, region C:3-92 [Jmol] [rasmolscript] [script source]     - Domain d1b06c2, region C:93-210 [Jmol] [rasmolscript] [script source]     - Domain d1b06d1, region D:3-92 [Jmol] [rasmolscript] [script source]     - Domain d1b06d2, region D:93-210 [Jmol] [rasmolscript] [script source]     - Domain d1b06e1, region E:3-92 [Jmol] [rasmolscript] [script source]     - Domain d1b06e2, region E:93-210 [Jmol] [rasmolscript] [script source]     - Domain d1b06f1, region F:3-92 [Jmol] [rasmolscript] [script source]     - Domain d1b06f2, region F:93-210 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1b06_E] [1b06_C] [1b06_A] [1b06_F] [1b06_B] [1b06_D] [1b06] SWISS-PROT database: [Q08713] Domain organization of [SODF_SULAC] by SWISSPFAM

Other resources with information on 1B06

Community annotation for 1B06 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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