1B0C Hydrolase Inhibitor date Nov 06, 1998
title Evidence Of A Common Decamer In Three Crystal Structures Of Crystallized From Thiocyanate, Chloride Or Sulfate
authors C.Hamiaux, T.Prange, M.Ries-Kautt, A.Ducruix, S.Lafont, J.P.Astie S.Veesler
compound source
Molecule: Protein (Pancreatic Trypsin Inhibitor)
Chain: A, B, C, D, E
Synonym: Basic Protease Inhibitor, Bpi, Bpti, Aprotinin
Engineered: Yes
 Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
symmetry Space Group: P 64 2 2
R_factor 0.198 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.470 95.470 159.690 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
related structures by homologous chain: 1EAW, 1MTN
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E, B


Primary referenceThe BPTI decamer observed in acidic pH crystal forms pre-exists as a stable species in solution., Hamiaux C, Perez J, Prange T, Veesler S, Ries-Kautt M, Vachette P, J Mol Biol 2000 Mar 31;297(3):697-712. PMID:10731422
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (1b0c.pdb1.gz) 81 Kb
  • CSU: Contacts of Structural Units for 1B0C
  • Likely Quarternary Molecular Structure file(s) for 1B0C
  • Structure Factors (173 Kb)
  • Retrieve 1B0C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1B0C from S2C, [Save to disk]
  • Re-refined 1b0c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1B0C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1B0C
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1B0C, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1b0ca_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1b0cb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1b0cc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1b0cd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1b0ce_, region E [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1b0c_C] [1b0c_A] [1b0c] [1b0c_D] [1b0c_E] [1b0c_B]
  • SWISS-PROT database: [P00974]
  • Domain organization of [BPT1_BOVIN] by SWISSPFAM
  • Domain found in 1B0C: [KU ] by SMART
    • Other resources with information on 1B0C
  • Community annotation for 1B0C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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