1B0S Dna date Nov 12, 1998
title Binding Of Ar-1-144, A Tri-Imidazole Dna Minor Groove Binder Sequence Analyzed By Nmr Spectroscopy
authors X.L.Yang, C.Kaenzig, M.Lee, A.H.J.Wang
compound source
Molecule: Dna (5'-D(Gpapapcpcpgpgptptpc)-3')
Chain: A, B
Engineered: Yes
Synthetic: Yes
methodSolution NMR
ligand AR1 enzyme
Primary referenceBinding of AR-1-144, a tri-imidazole DNA minor groove binder, to CCGG sequence analyzed by NMR spectroscopy., Yang XL, Kaenzig C, Lee M, Wang AH, Eur J Biochem 1999 Aug;263(3):646-55. PMID:10469127
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • Biological Unit Coordinates (1b0s.pdb1.gz) 14 Kb
  • LPC: Ligand-Protein Contacts for 1B0S
  • CSU: Contacts of Structural Units for 1B0S
  • Original NMR restraints for 1B0S from PDB
  • Retrieve 1B0S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1B0S from S2C, [Save to disk]
  • View 1B0S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1B0S
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1B0S, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1b0s_B] [1b0s] [1b0s_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1B0S
  • Community annotation for 1B0S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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