1B37 Oxidoreductase date Dec 17, 1998
title A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal Struc Polyamine Oxidase
authors C.Binda, A.Coda, R.Angelini, R.Federico, P.Ascenzi, A.Mattevi
compound source
Molecule: Protein (Polyamine Oxidase)
Chain: A, B, C
Fragment: Fad-Binding Domain
Ec: 1.5.3.11
 Organism_scientific: Zea Mays
Organism_taxid: 4577
symmetry Space Group: P 65 2 2
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
184.800 184.800 282.200 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand FAD, FCA, MAN, NAG enzyme Oxidoreductase E.C.1.5.3.11 BRENDA
related structures by homologous chain: 1H82, 1H86
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceA 30-angstrom-long U-shaped catalytic tunnel in the crystal structure of polyamine oxidase., Binda C, Coda A, Angelini R, Federico R, Ascenzi P, Mattevi A, Structure Fold Des 1999 Mar 15;7(3):265-76. PMID:10368296
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (246 Kb) [Save to disk]
  • Biological Unit Coordinates (1b37.pdb1.gz) 82 Kb
  • Biological Unit Coordinates (1b37.pdb2.gz) 82 Kb
  • Biological Unit Coordinates (1b37.pdb3.gz) 83 Kb
  • Biological Unit Coordinates (1b37.pdb4.gz) 475 Kb
  • Biological Unit Coordinates (1b37.pdb5.gz) 160 Kb
  • Biological Unit Coordinates (1b37.pdb6.gz) 162 Kb
  • LPC: Ligand-Protein Contacts for 1B37
  • CSU: Contacts of Structural Units for 1B37
  • Likely Quarternary Molecular Structure file(s) for 1B37
  • Structure Factors (1718 Kb)
  • Retrieve 1B37 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1B37 from S2C, [Save to disk]
  • Re-refined 1b37 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1B37 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1B37
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1B37, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1b37a2, region A:294-405 [Jmol] [rasmolscript] [script source]
        - Domain d1b37a1, region A:5-293,A:406-463 [Jmol] [rasmolscript] [script source]
        - Domain d1b37b2, region B:294-405 [Jmol] [rasmolscript] [script source]
        - Domain d1b37b1, region B:5-293,B:406-466 [Jmol] [rasmolscript] [script source]
        - Domain d1b37c2, region C:294-405 [Jmol] [rasmolscript] [script source]
        - Domain d1b37c1, region C:5-293,C:406-466 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1b37_A] [1b37_C] [1b37_B] [1b37]
  • SWISS-PROT database: [O64411]
  • Domain organization of [PAO_MAIZE] by SWISSPFAM
    • Other resources with information on 1B37
  • Community annotation for 1B37 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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