1B8N Transferase date Feb 02, 1999
title Purine Nucleoside Phosphorylase
authors A.A.Fedorov, G.A.Kicska, E.V.Fedorov, B.V.Strokopytov, P.C.Tyler R.H.Furneaux, V.L.Schramm, S.C.Almo
compound source
Molecule: Purine Nucleoside Phosphorylase
Chain: A
Ec: 2.4.2.1
Other_details: Complexed With Transition-State Analogue 1,4 1,4-Imino-1-(S)-(9-Deazaguanin-9-Yl)-D-Ribitol
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Spleen
symmetry Space Group: P 21 3
R_factor 0.164 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.320 90.320 90.320 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand IMG, MG, PO4 BindingDB enzyme Transferase E.C.2.4.2.1 BRENDA
related structures by homologous chain: 1A9S, 4PNP
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAtomic dissection of the hydrogen bond network for transition-state analogue binding to purine nucleoside phosphorylase., Kicska GA, Tyler PC, Evans GB, Furneaux RH, Shi W, Fedorov A, Lewandowicz A, Cahill SM, Almo SC, Schramm VL, Biochemistry 2002 Dec 10;41(49):14489-98. PMID:12463747
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (1b8n.pdb1.gz) 48 Kb
  • Biological Unit Coordinates (1b8n.pdb2.gz) 139 Kb
  • LPC: Ligand-Protein Contacts for 1B8N
  • CSU: Contacts of Structural Units for 1B8N
  • Likely Quarternary Molecular Structure file(s) for 1B8N
  • Retrieve 1B8N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1B8N from S2C, [Save to disk]
  • View 1B8N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1B8N
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1B8N, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1b8na_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1b8n] [1b8n_A]
  • SWISS-PROT database: [P55859]
  • Domain organization of [PNPH_BOVIN] by SWISSPFAM
  • Other resources with information on 1B8N
  • Community annotation for 1B8N at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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