1BAJ Viral Protein date Apr 17, 1998
title Hiv-1 Capsid Protein C-Terminal Fragment Plus Gag P2 Domain
authors D.K.Worthylake, H.Wang, S.Yoo, W.I.Sundquist, C.P.Hill
compound source
Molecule: Gag Polyprotein
Chain: A
Fragment: C-Terminal Domain Of Hiv-1 Capsid Protein (Residu Capsid Numbering) Followed By The 14 Amino Acid P2 Domain O
Engineered: Yes
Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Cell_line: Bl21
Gene: Gag
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_plasmid: Bl21
Expression_system_gene: Gag
symmetry Space Group: I 41
R_factor 0.207 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.330 61.330 59.570 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
related structures by homologous chain: 1A43
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructures of the HIV-1 capsid protein dimerization domain at 2.6 A resolution., Worthylake DK, Wang H, Yoo S, Sundquist WI, Hill CP, Acta Crystallogr D Biol Crystallogr 1999 Jan;55 ( Pt 1):85-92. PMID:10089398
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (16 Kb) [Save to disk]
  • Biological Unit Coordinates (1baj.pdb1.gz) 24 Kb
  • CSU: Contacts of Structural Units for 1BAJ
  • Likely Quarternary Molecular Structure file(s) for 1BAJ
  • Structure Factors (22 Kb)
  • Retrieve 1BAJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BAJ from S2C, [Save to disk]
  • Re-refined 1baj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1BAJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BAJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BAJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1baj__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1baj] [1baj_A]
  • SWISS-PROT database: [P12497]
  • Domain organization of [POL_HV1N5] by SWISSPFAM
  • Other resources with information on 1BAJ
  • Community annotation for 1BAJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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