1BG5 Ankyrin Binding date Jun 05, 1998
title Crystal Structure Of The Ankyrin Binding Domain Of Alpha-Na, As A Fusion Protein With Glutathione S-Transferase
authors Z.Zhang, P.Devarajan, J.S.Morrow
compound source
Molecule: Fusion Protein Of Alpha-Na,K-Atpase With Glutathi Transferase;
Chain: A
Fragment: Residues 1-218 From Glutathione S-Transferase, Re 219-254 From Minimal Alpha-Na,K-Atpase Ankyrin Binding Doma
Synonym: Mab
Engineered: Yes
Fragment: Residues 219-254
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Organ: Blood
Cellular_location: Plasma Membrane
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pgex-2t
symmetry Space Group: P 43 21 2
R_factor 0.193 R_Free 0.359
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.170 92.170 57.570 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
related structures by homologous chain: 1GNE, 1GTB
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the ankyrin-binding domain of alpha-Na,K-ATPase., Zhang Z, Devarajan P, Dorfman AL, Morrow JS, J Biol Chem 1998 Jul 24;273(30):18681-4. PMID:9668035
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (1bg5.pdb1.gz) 86 Kb
  • CSU: Contacts of Structural Units for 1BG5
  • Likely Quarternary Molecular Structure file(s) for 1BG5
  • Retrieve 1BG5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BG5 from S2C, [Save to disk]
  • View 1BG5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BG5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BG5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bg5_2, region 1-80 [Jmol] [rasmolscript] [script source]
        - Domain d1bg5_1, region 81-254 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bg5_A] [1bg5]
  • SWISS-PROT database: [P08515]
  • Domain organization of [GST26_SCHJA] by SWISSPFAM
  • Other resources with information on 1BG5
  • Community annotation for 1BG5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1BG5 from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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