1BH6 Hydrolase date Jun 15, 1998
title Subtilisin Dy In Complex With The Synthetic Inhibitor N- Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
authors S.Eschenburg, N.Genov, K.S.Wilson, C.Betzel
compound source
Molecule: Subtilisin Dy
Chain: A
Ec: 3.4.21.62
Organism_scientific: Bacillus Licheniformis
Organism_taxid: 1402
Variant: Dy
Other_details: X-Irradiated Japanese Strain Of Bacillus Licheniformis
symmetry Space Group: P 21 21 21
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.830 72.750 59.890 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand 1BH, CA, NA enzyme Hydrolase E.C.3.4.21.62 BRENDA
related structures by homologous chain: 1SUB, 1Y3F
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of subtilisin DY, a random mutant of subtilisin Carlsberg., Eschenburg S, Genov N, Peters K, Fittkau S, Stoeva S, Wilson KS, Betzel C, Eur J Biochem 1998 Oct 15;257(2):309-18. PMID:9826175
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (1bh6.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 1BH6
  • CSU: Contacts of Structural Units for 1BH6
  • Likely Quarternary Molecular Structure file(s) for 1BH6
  • Structure Factors (360 Kb)
  • Retrieve 1BH6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BH6 from S2C, [Save to disk]
  • Re-refined 1bh6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1BH6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BH6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BH6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bh6a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bh6_A] [1bh6]
  • SWISS-PROT database: [P00781]
  • Domain organization of [SUBD_BACLI] by SWISSPFAM
  • Other resources with information on 1BH6
  • Community annotation for 1BH6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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