1BJJ Presynaptic Neurotoxin date Jun 25, 1998
title Agkistrodotoxin, A Phospholipase A2-Type Presynaptic Neuroto Agkistrodon Halys Pallas
authors L.Tang, Y.Zhou, Z.Lin
compound source
Molecule: Agkistrodotoxin
Chain: A, B, C, D, E, F
Synonym: Atx
Ec: 3.1.1.4
Organism_scientific: Gloydius Halys
Organism_common: Halys Viper
Organism_taxid: 8714
Secretion: Venom
Other_details: The Snake Is Also Named Agkistrodon Blomhoff Brevicaudus
symmetry Space Group: P 21 21 21
R_factor 0.194 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.750 105.800 110.030 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand CA enzyme Hydrolase E.C.3.1.1.4 BRENDA
related structures by homologous chain: 1A2A, 1SV9
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B
  • toxin activity


  • Primary referenceStructure of agkistrodotoxin in an orthorhombic crystal form with six molecules per asymmetric unit., Tang L, Zhou YC, Lin ZJ, Acta Crystallogr D Biol Crystallogr. 1999 Dec;55(Pt 12):1986-96. PMID:10666574
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (123 Kb) [Save to disk]
  • Biological Unit Coordinates (1bjj.pdb1.gz) 22 Kb
  • Biological Unit Coordinates (1bjj.pdb2.gz) 22 Kb
  • Biological Unit Coordinates (1bjj.pdb3.gz) 22 Kb
  • Biological Unit Coordinates (1bjj.pdb4.gz) 22 Kb
  • Biological Unit Coordinates (1bjj.pdb5.gz) 22 Kb
  • Biological Unit Coordinates (1bjj.pdb6.gz) 22 Kb
  • Biological Unit Coordinates (1bjj.pdb7.gz) 41 Kb
  • Biological Unit Coordinates (1bjj.pdb8.gz) 41 Kb
  • Biological Unit Coordinates (1bjj.pdb9.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 1BJJ
  • CSU: Contacts of Structural Units for 1BJJ
  • Likely Quarternary Molecular Structure file(s) for 1BJJ
  • Retrieve 1BJJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BJJ from S2C, [Save to disk]
  • View 1BJJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BJJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BJJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bjja_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1bjjb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1bjjc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1bjjd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1bjje_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1bjjf_, region F [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bjj_B] [1bjj] [1bjj_A] [1bjj_D] [1bjj_C] [1bjj_E] [1bjj_F]
  • SWISS-PROT database: [P14421]
  • Domain organization of [PA23_AGKHP] by SWISSPFAM
  • Domain found in 1BJJ: [PA2c ] by SMART
  • Other resources with information on 1BJJ
  • Community annotation for 1BJJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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