1BJW Aminotransferase date Jun 30, 1998
title Aspartate Aminotransferase From Thermus Thermophilus
authors T.Nakai, K.Okada, S.Kuramitsu, K.Hirotsu, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Aspartate Aminotransferase
Chain: A, B
Ec: 2.6.1.1
Engineered: Yes
Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Ab1157
Expression_system_vector_type: Plasmid
symmetry Space Group: P 21 21 21
R_factor 0.215 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.600 113.860 124.400 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand LLP, PO4 enzyme Transferase E.C.2.6.1.1 BRENDA
related structures by homologous chain: 1B5P, 5BJ4
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of Thermus thermophilus HB8 aspartate aminotransferase and its complex with maleate., Nakai T, Okada K, Akutsu S, Miyahara I, Kawaguchi S, Kato R, Kuramitsu S, Hirotsu K, Biochemistry 1999 Feb 23;38(8):2413-24. PMID:10029535
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (129 Kb) [Save to disk]
  • Biological Unit Coordinates (1bjw.pdb1.gz) 125 Kb
  • LPC: Ligand-Protein Contacts for 1BJW
  • CSU: Contacts of Structural Units for 1BJW
  • Likely Quarternary Molecular Structure file(s) for 1BJW
  • Retrieve 1BJW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BJW from S2C, [Save to disk]
  • View 1BJW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BJW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BJW, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bjwa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1bjwb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bjw_B] [1bjw_A] [1bjw]
  • SWISS-PROT database: [Q56232]
  • Domain organization of [AAT_THET8] by SWISSPFAM
  • Other resources with information on 1BJW
  • Community annotation for 1BJW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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