1BM1 Photoreceptor date Jul 28, 1998
title Crystal Structure Of Bacteriorhodopsin In The Light-Adapted
authors H.Sato, K.Takeda, K.Tani, T.Hino, T.Okada, M.Nakasako, N.Kamiya, T.
compound source
Molecule: Bacteriorhodopsin
Chain: A
Organism_scientific: Halobacterium Salinarum
Organism_taxid: 2242
Strain: Jw3
symmetry Space Group: P 6 2 2
R_factor 0.260 R_Free 0.311
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.700 104.700 114.100 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.50 Å
ligand DPG, RET enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • ion channel activity


  • Primary referenceSpecific lipid-protein interactions in a novel honeycomb lattice structure of bacteriorhodopsin., Sato H, Takeda K, Tani K, Hino T, Okada T, Nakasako M, Kamiya N, Kouyama T, Acta Crystallogr D Biol Crystallogr 1999 Jul;55 ( Pt 7):1251-6. PMID:10393291
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (1bm1.pdb1.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 1BM1
  • CSU: Contacts of Structural Units for 1BM1
  • Likely Quarternary Molecular Structure file(s) for 1BM1
  • Retrieve 1BM1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BM1 from S2C, [Save to disk]
  • View 1BM1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BM1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BM1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bm1__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bm1] [1bm1_A]
  • SWISS-PROT database: [P02945]
  • Belongs to the ion-translocating microbial rhodopsin (mr) family according to TCDB.
  • Domain organization of [BACR_HALSA] by SWISSPFAM
  • Domain found in 1BM1: [Bac_rhodopsin ] by SMART
  • Other resources with information on 1BM1
  • Community annotation for 1BM1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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