1BMV PROTEIN-RNA INTERACTIONS IN AN ICOSAHEDRAL VIRUS AT 3.0 ANGSTROMS RESOLUTION date
authors Chen, Z., Stauffacher, C., Li, Y., Schmidt, T., Bomu, W., Kamer, G., Shanks, M., Lomonossoff, G., Johnson, J.E.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.00
Gene
Ontology
ChainFunctionProcessComponent
1


2


Primary referenceProtein-RNA interactions in an icosahedral virus at 3.0 A resolution., Chen ZG, Stauffacher C, Li Y, Schmidt T, Bomu W, Kamer G, Shanks M, Lomonossoff G, Johnson JE, Science 1989 Jul 14;245(4914):154-9. PMID:2749253
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (1bmv.pdb1.gz) 4615 Kb
  • CSU: Contacts of Structural Units for 1BMV
  • Likely Quarternary Molecular Structure file(s) for 1BMV
  • Structure Factors (4652 Kb)
  • Retrieve 1BMV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BMV from S2C, [Save to disk]
    • View 1BMV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1BMV
  • VIPERdb: visual, structural and computational analysis of 1BMV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BMV, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Genome occurence of 1BMV's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bmv11, region 1:1001-1185 [Jmol] [rasmolscript] [script source]
        - Domain d1bmv22, region 2:2001-2189 [Jmol] [rasmolscript] [script source]
        - Domain d1bmv21, region 2:3001-3182 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bmv] [1bmv_M] [1bmv_2] [1bmv_1]
  • SWISS-PROT database: [P23009]
  • Domain organization of [POL2_BPMV] by SWISSPFAM
    • Other resources with information on 1BMV
  • Community annotation for 1BMV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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