1BNB Beta-Defensin 12 date Mar 08, 1995
title Solution Structure Of Bovine Neutrophil Beta-Defensin 12: Th Fold Of The Beta-Defensins Is Identical To That Of The Clas Defensins
authors G.R.Zimmermann, P.Legault, M.E.Selsted, A.Pardi
compound source
Molecule: Bovine Neutrophil Beta-Defensin 12
Chain: A
 Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Neutrophils
Cell: Polymorphonucleocyte
methodSolution NMR
note 1BNB is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A
  • chemoattractant activity


    • Primary referenceSolution structure of bovine neutrophil beta-defensin-12: the peptide fold of the beta-defensins is identical to that of the classical defensins., Zimmermann GR, Legault P, Selsted ME, Pardi A, Biochemistry 1995 Oct 17;34(41):13663-71. PMID:7577957
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (215 Kb) [Save to disk]
  • Biological Unit Coordinates (1bnb.pdb1.gz) 11 Kb
  • CSU: Contacts of Structural Units for 1BNB
  • Original NMR restraints for 1BNB from PDB
  • Retrieve 1BNB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BNB from S2C, [Save to disk]
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  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1BNB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BNB, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bnb__, region [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bnb_A] [1bnb]
  • SWISS-PROT database: [P46170]
  • Domain organization of [DFB12_BOVIN] by SWISSPFAM
  • Domain found in 1BNB: [DEFSN ] by SMART
    • Other resources with information on 1BNB
  • Community annotation for 1BNB at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
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  • Images from IMB Jena Image Library of Biological Macromolecules.

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