1BNP	Nucleotidyltransferase (Dna-Binding)	date	Apr 25, 1996
title	Nmr Solution Structure Of The N-Terminal Domain Of Dna Polym Beta, 55 Structures
authors	D.J.Liu, R.Prasad, S.H.Wilson, E.F.Derose, G.P.Mullen
compound		source
Molecule: Dna Polymerase Beta Chain: A Fragment: N-Terminal Domain, Residues 1 - 87 Ec: 2.7.7.7 Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Bacterial Expression_system_plasmid: Prset-8k
method	Solution NMR
ligand		enzyme	Transferase E.C.2.7.7.7 BRENDA
note	1BNP is a representative structure
Primary reference	Three-dimensional solution structure of the N-terminal domain of DNA polymerase beta and mapping of the ssDNA interaction interface., Liu D, Prasad R, Wilson SH, DeRose EF, Mullen GP, Biochemistry 1996 May 21;35(20):6188-200. PMID:8639559

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1475 Kb) [Save to disk] Biological Unit Coordinates (1bnp.pdb1.gz) 27 Kb CSU: Contacts of Structural Units for 1BNP Experimental data, such as chemical shifts, at BioMagResBank (BMRB) NMR Restraints Grid from BioMagResBank (BMRB) Retrieve 1BNP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1BNP from S2C, [Save to disk]

View 1BNP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1BNP

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1BNP, from MSDmotif at EBI Genome occurence of 1BNP's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1bnp__, region [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1bnp_A] [1bnp] SWISS-PROT database: [P06766] Domain organization of [DPOLB_RAT] by SWISSPFAM Domain found in 1BNP: [HhH1 ] by SMART

Other resources with information on 1BNP

Community annotation for 1BNP at PDBWiki (http://pdbwiki.org) NMR Ensemble (OLDERADO: core, domain and representative structure database) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---