1BOA Aminopeptidase date Aug 01, 1998
title Human Methionine Aminopeptidase 2 Complexed With Angiogenesi Inhibitor Fumagillin
authors S.Liu, J.Widom, C.W.Kemp, C.M.Crews, J.C.Clardy
compound source
Molecule: Methionine Aminopeptidase
Chain: A
Ec: 3.4.11.18
Engineered: Yes
Other_details: Complex With Fumagillin And Cobalt
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cellular_location: Cytoplasm
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf21 Cells
Expression_system_vector: Baculovirus, Pacsg2
symmetry Space Group: C 2 2 21
R_factor 0.193 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.700 99.580 101.950 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand CO, FUG enzyme Hydrolase E.C.3.4.11.18 BRENDA
related structures by homologous chain: 1BN5, 1KQ9
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of human methionine aminopeptidase-2 complexed with fumagillin., Liu S, Widom J, Kemp CW, Crews CM, Clardy J, Science 1998 Nov 13;282(5392):1324-7. PMID:9812898
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (1boa.pdb1.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 1BOA
  • CSU: Contacts of Structural Units for 1BOA
  • Likely Quarternary Molecular Structure file(s) for 1BOA
  • Retrieve 1BOA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BOA from S2C, [Save to disk]
  • View 1BOA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BOA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BOA, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1boa_2, region 110-374,449-478 [Jmol] [rasmolscript] [script source]
        - Domain d1boa_1, region 375-448 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1boa_A] [1boa]
  • SWISS-PROT database: [P50579]
  • Domain organization of [AMPM2_HUMAN] by SWISSPFAM
  • Other resources with information on 1BOA
  • Community annotation for 1BOA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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