1BOD Calcium-Binding Protein date Apr 23, 1993
title The Solution Structures Of Mutant Calbindin D9k'S, As Determ Nmr, Show That The Calcium Binding Site Can Adopt Different
authors C.Johansson, M.Ullner, T.Drakenberg
compound source
Molecule: Calbindin D9k
Chain: A
Engineered: Yes
Mutation: Yes
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Intestine
methodSolution NMR
related structures by homologous chain: 1BOC, 2BCB
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe solution structures of mutant calbindin D9k's, as determined by NMR, show that the calcium-binding site can adopt different folds., Johansson C, Ullner M, Drakenberg T, Biochemistry 1993 Aug 24;32(33):8429-38. PMID:8357794
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (475 Kb) [Save to disk]
  • Biological Unit Coordinates (1bod.pdb1.gz) 20 Kb
  • CSU: Contacts of Structural Units for 1BOD
  • Retrieve 1BOD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BOD from S2C, [Save to disk]
  • View 1BOD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BOD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BOD, from MSDmotif at EBI
  • Genome occurence of 1BOD's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bod__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bod] [1bod_A]
  • SWISS-PROT database: [P02633]
  • Domain organization of [S100G_BOVIN] by SWISSPFAM
  • Domains found in 1BOD: [EFh] [S_100 ] by SMART
  • Other resources with information on 1BOD
  • Community annotation for 1BOD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science