1BQ4 Isomerase date Aug 20, 1998
title Saccharomyces Cerevisiae Phosphoglycerate Mutase In Complex Benzene Hexacarboxylate
authors D.J.Rigden, S.E.V.Phillips, L.A.Fothergill-Gilmore
compound source
Molecule: Protein (Phosphoglycerate Mutase 1)
Chain: D, C, A, B
Synonym: Phosphoglyceromutase
Ec: 5.4.2.1
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Strain: S150-Gpm::His3
Cellular_location: Cytoplasm
symmetry Space Group: P 1 21 1
R_factor 0.204 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.510 92.520 148.050 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand BHC, SO4 enzyme Isomerase E.C.5.4.2.1 BRENDA
related structures by homologous chain: 1BQ3, 4PGM
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referencePolyanionic inhibitors of phosphoglycerate mutase: combined structural and biochemical analysis., Rigden DJ, Walter RA, Phillips SE, Fothergill-Gilmore LA, J Mol Biol 1999 Jun 18;289(4):691-9. PMID:10369755
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (156 Kb) [Save to disk]
  • Biological Unit Coordinates (1bq4.pdb1.gz) 150 Kb
  • LPC: Ligand-Protein Contacts for 1BQ4
  • CSU: Contacts of Structural Units for 1BQ4
  • Likely Quarternary Molecular Structure file(s) for 1BQ4
  • Structure Factors (1098 Kb)
  • Retrieve 1BQ4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BQ4 from S2C, [Save to disk]
  • Re-refined 1bq4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1BQ4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BQ4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BQ4, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bq4a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1bq4b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1bq4c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1bq4d_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bq4_C] [1bq4_A] [1bq4_B] [1bq4_D] [1bq4]
  • SWISS-PROT database: [P00950]
  • Domain organization of [PMG1_YEAST] by SWISSPFAM
  • Domain found in 1BQ4: [PGAM ] by SMART
  • Other resources with information on 1BQ4
  • Community annotation for 1BQ4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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