1BRD Photoreceptor date May 23, 1990
title Model For The Structure Of Bacteriorhodopsin Based On High-R Electron Cryo-Microscopy
authors R.Henderson, J.M.Baldwin, T.A.Ceska, F.Zemlin, E.Beckmann, K.H.Do
compound source
Molecule: Bacteriorhodopsin Precursor
Chain: A
Engineered: Yes
 Organism_scientific: Halobacterium Salinarum
Organism_taxid: 2242
symmetry Space Group: P 3
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.450 62.450 100.000 90.00 90.00 120.00
method Electron Crystallographyresolution 3.50 Å
ligand RET enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • ion channel activity


    • Primary referenceModel for the structure of bacteriorhodopsin based on high-resolution electron cryo-microscopy., Henderson R, Baldwin JM, Ceska TA, Zemlin F, Beckmann E, Downing KH, J Mol Biol 1990 Jun 20;213(4):899-929. PMID:2359127
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk]
  • Biological Unit Coordinates (1brd.pdb1.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 1BRD
  • CSU: Contacts of Structural Units for 1BRD
  • Likely Quarternary Molecular Structure file(s) for 1BRD
  • Structure Factors (14 Kb)
  • Retrieve 1BRD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BRD from S2C, [Save to disk]
  • Re-refined 1brd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1BRD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1BRD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BRD, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1brd__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1brd] [1brd_A]
  • SWISS-PROT database: [P02945]
  • Belongs to the ion-translocating microbial rhodopsin (mr) family according to TCDB.
  • Domain organization of [BACR_HALSA] by SWISSPFAM
  • Domain found in 1BRD: [Bac_rhodopsin ] by SMART
    • Other resources with information on 1BRD
  • Community annotation for 1BRD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1BRD from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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