1BS0 Transferase date Aug 31, 1998
title Plp-Dependent Acyl-Coa Synthase
authors D.Alexeev, M.Alexeeva, R.L.Baxter, D.J.Campopiano, S.P.Webster, L
compound source
Molecule: Protein (8-Amino-7-Oxonanoate Synthase)
Chain: A
Synonym: Aons, 8-Amino-7-Ketopelargonate Synthase
Ec: 2.3.1.47
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: B834(De3)
Gene: Biof
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Puc18
symmetry Space Group: P 31 1 2
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.520 58.520 194.640 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.65 Å
ligand SO4 enzyme Transferase E.C.2.3.1.47 BRENDA
related structures by homologous chain: 1DJE
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe crystal structure of 8-amino-7-oxononanoate synthase: a bacterial PLP-dependent, acyl-CoA-condensing enzyme., Alexeev D, Alexeeva M, Baxter RL, Campopiano DJ, Webster SP, Sawyer L, J Mol Biol 1998 Nov 27;284(2):401-19. PMID:9813126
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (1bs0.pdb1.gz) 71 Kb
  • Biological Unit Coordinates (1bs0.pdb2.gz) 139 Kb
  • LPC: Ligand-Protein Contacts for 1BS0
  • CSU: Contacts of Structural Units for 1BS0
  • Likely Quarternary Molecular Structure file(s) for 1BS0
  • Retrieve 1BS0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BS0 from S2C, [Save to disk]
  • View 1BS0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BS0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BS0, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bs0a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bs0_A] [1bs0]
  • SWISS-PROT database: [P12998]
  • Domain organization of [BIOF_ECOLI] by SWISSPFAM
  • Other resources with information on 1BS0
  • Community annotation for 1BS0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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