1BVU	Oxidoreductase	date	Jul 20, 1999
title	Glutamate Dehydrogenase From Thermococcus Litoralis
authors	P.J.Baker, K.L.Britton, K.S.Yip, T.J.Stillman, D.W.Rice
compound		source
Molecule: Protein (Glutamate Dehydrogenase) Chain: A, B, C, D, E, F Ec: 1.4.1.3		Organism_scientific: Thermococcus Litoralis Organism_taxid: 2265
symmetry	Space Group: C 1 2 1	R_factor R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 141.900 197.500 125.700 90.00 113.60 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand		enzyme	Oxidoreductase E.C.1.4.1.3 BRENDA
related structures	by homologous chain: 1EUZ
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	Structure determination of the glutamate dehydrogenase from the hyperthermophile Thermococcus litoralis and its comparison with that from Pyrococcus furiosus., Britton KL, Yip KS, Sedelnikova SE, Stillman TJ, Adams MW, Ma K, Maeder DL, Robb FT, Tolliday N, Vetriani C, Rice DW, Baker PJ, J Mol Biol 1999 Nov 12;293(5):1121-32. PMID:10547290

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (389 Kb) [Save to disk] Biological Unit Coordinates (1bvu.pdb1.gz) 384 Kb CSU: Contacts of Structural Units for 1BVU Likely Quarternary Molecular Structure file(s) for 1BVU Retrieve 1BVU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1BVU from S2C, [Save to disk]

View 1BVU in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1BVU

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1BVU, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1bvua1, region A:181-418 [Jmol] [rasmolscript] [script source]     - Domain d1bvua2, region A:3-180 [Jmol] [rasmolscript] [script source]     - Domain d1bvub1, region B:181-418 [Jmol] [rasmolscript] [script source]     - Domain d1bvub2, region B:3-180 [Jmol] [rasmolscript] [script source]     - Domain d1bvuc1, region C:181-418 [Jmol] [rasmolscript] [script source]     - Domain d1bvuc2, region C:3-180 [Jmol] [rasmolscript] [script source]     - Domain d1bvud1, region D:181-418 [Jmol] [rasmolscript] [script source]     - Domain d1bvud2, region D:3-180 [Jmol] [rasmolscript] [script source]     - Domain d1bvue1, region E:181-418 [Jmol] [rasmolscript] [script source]     - Domain d1bvue2, region E:3-180 [Jmol] [rasmolscript] [script source]     - Domain d1bvuf1, region F:181-418 [Jmol] [rasmolscript] [script source]     - Domain d1bvuf2, region F:3-180 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1bvu_D] [1bvu_E] [1bvu_B] [1bvu_A] [1bvu_C] [1bvu_F] [1bvu] SWISS-PROT database: [Q56304] Domain organization of [DHE3_THELI] by SWISSPFAM Domain found in 1BVU: [ELFV_dehydrog ] by SMART

Other resources with information on 1BVU

Community annotation for 1BVU at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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