1BW5 Dna Binding Protein date Sep 29, 1998
title The Nmr Solution Structure Of The Homeodomain Of The Rat Ins Enhancer Protein Isl-1, 50 Structures
authors J.H.Ippel, G.Larsson, G.Behravan, J.Zdunek, M.Lundqvist, J.Schleu O.Lycksell, S.S.Wijmenga
compound source
Molecule: Insulin Gene Enhancer Protein Isl-1
Chain: A
Synonym: Isl-1hd
 Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Organ: Pancreas
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe solution structure of the homeodomain of the rat insulin-gene enhancer protein isl-1. Comparison with other homeodomains., Ippel H, Larsson G, Behravan G, Zdunek J, Lundqvist M, Schleucher J, Lycksell PO, Wijmenga S, J Mol Biol 1999 May 14;288(4):689-703. PMID:10329173
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (948 Kb) [Save to disk]
  • Biological Unit Coordinates (1bw5.pdb1.gz) 19 Kb
  • CSU: Contacts of Structural Units for 1BW5
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1BW5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BW5 from S2C, [Save to disk]
    • View 1BW5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1BW5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BW5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bw5__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bw5] [1bw5_A]
  • SWISS-PROT database: [P50480]
  • Domain organization of [ISL2_RAT] by SWISSPFAM
  • Domain found in 1BW5: [HOX ] by SMART
    • Other resources with information on 1BW5
  • Community annotation for 1BW5 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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