1BX5 Dna date Sep 28, 1998
title Nmr Solution Structure Of [D(Gcgaat-3'-3'-Alphat-5'-5'-Cgc)2
authors J.M.Aramini, A.Mujeeb, M.W.Germann
compound source
Molecule: Dna (5'-D(Gpcpgpapaptp(Atd)Pcpgpc)-3')
Chain: A, B
Engineered: Yes
Mutation: Yes
Other_details: Alpha Anomeric Thymidines At Position 7 3'-3 Phosphodiester Linkage Between T6 And Alphat7 5'-5' Phospho Linkage Between Alphat7 And C8
 Synthetic: Yes
methodSolution NMR
ligand ATD enzyme
Primary referenceNMR solution structures of [d(GCGAAT-3'-3'-alphaT-5'-5'-CGC)2] and its unmodified control., Aramini JM, Mujeeb A, Germann MW, Nucleic Acids Res 1998 Dec 15;26(24):5644-54. PMID:9837995
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (14 Kb) [Save to disk]
  • Biological Unit Coordinates (1bx5.pdb1.gz) 11 Kb
  • LPC: Ligand-Protein Contacts for 1BX5
  • CSU: Contacts of Structural Units for 1BX5
  • Original NMR restraints for 1BX5 from PDB
  • Retrieve 1BX5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BX5 from S2C, [Save to disk]
    • View 1BX5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1BX5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BX5, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bx5] [1bx5_A] [1bx5_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1BX5
  • Community annotation for 1BX5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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