1BY7 Protein Binding date Oct 27, 1998
title Human Plasminogen Activator Inhibitor-2. Loop (66-98) Deleti
authors S.J.Harrop, G.C.King, B.C.Mabbutt, P.M.G.Curmi
compound source
Molecule: Protein (Plasminogen Activator Inhibitor-2)
Chain: A
Synonym: Pai-2
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.202 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
138.820 41.730 77.400 90.00 114.88 90.00
method X-Ray Diffractionresolution 2.00 Å
related structures by homologous chain: 1HLE
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe crystal structure of plasminogen activator inhibitor 2 at 2.0 A resolution: implications for serpin function., Harrop SJ, Jankova L, Coles M, Jardine D, Whittaker JS, Gould AR, Meister A, King GC, Mabbutt BC, Curmi PM, Structure Fold Des 1999 Jan 15;7(1):43-54. PMID:10368272
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (1by7.pdb1.gz) 60 Kb
  • CSU: Contacts of Structural Units for 1BY7
  • Likely Quarternary Molecular Structure file(s) for 1BY7
  • Retrieve 1BY7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BY7 from S2C, [Save to disk]
  • View 1BY7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BY7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BY7, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1by7a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1by7] [1by7_A]
  • SWISS-PROT database: [P05120]
  • Domain organization of [PAI2_HUMAN] by SWISSPFAM
  • Domain found in 1BY7: [SERPIN ] by SMART
  • Other resources with information on 1BY7
  • Community annotation for 1BY7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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