1BYE Transferase date Oct 14, 1998
title Glutathione S-Transferase I From Mais In Complex With Atrazi Glutathione Conjugate
authors L.Prade, R.Huber, B.Bieseler
compound source
Molecule: Protein (Glutathione S-Transferase)
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Zea Mays
Organism_taxid: 4577
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.221 R_Free 0.305
crystal
cell
length a length b length c angle alpha angle beta angle gamma
169.610 60.280 121.430 90.00 126.22 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand ATA enzyme
related structures by homologous chain: 1AXD
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructures of herbicides in complex with their detoxifying enzyme glutathione S-transferase - explanations for the selectivity of the enzyme in plants., Prade L, Huber R, Bieseler B, Structure 1998 Nov 15;6(11):1445-52. PMID:9817846
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk]
  • Biological Unit Coordinates (1bye.pdb1.gz) 70 Kb
  • Biological Unit Coordinates (1bye.pdb2.gz) 70 Kb
  • Biological Unit Coordinates (1bye.pdb3.gz) 270 Kb
  • Biological Unit Coordinates (1bye.pdb4.gz) 136 Kb
  • LPC: Ligand-Protein Contacts for 1BYE
  • CSU: Contacts of Structural Units for 1BYE
  • Likely Quarternary Molecular Structure file(s) for 1BYE
  • Retrieve 1BYE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BYE from S2C, [Save to disk]
    • View 1BYE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1BYE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BYE, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1byea2, region A:1-80 [Jmol] [rasmolscript] [script source]
        - Domain d1byea1, region A:81-213 [Jmol] [rasmolscript] [script source]
        - Domain d1byeb2, region B:1-80 [Jmol] [rasmolscript] [script source]
        - Domain d1byeb1, region B:81-213 [Jmol] [rasmolscript] [script source]
        - Domain d1byec2, region C:1-80 [Jmol] [rasmolscript] [script source]
        - Domain d1byec1, region C:81-213 [Jmol] [rasmolscript] [script source]
        - Domain d1byed2, region D:1-80 [Jmol] [rasmolscript] [script source]
        - Domain d1byed1, region D:81-213 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bye_A] [1bye] [1bye_D] [1bye_B] [1bye_C]
  • SWISS-PROT database: [P12653]
  • Domain organization of [GSTF1_MAIZE] by SWISSPFAM
    • Other resources with information on 1BYE
  • Community annotation for 1BYE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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