1BZ5 Hydrolase Inhibitor date Nov 05, 1998
title Evidence Of A Common Decamer In Three Crystal Structures Of Crystallize From Thiocyanate, Chloride Or Sulfate
authors C.Hamiaux, T.Prange, M.Ries-Kautt, A.Ducruix, S.Lafont, J.P.Astie S.Veesler
compound source
Molecule: Pancreatic Trypsin Inhibitor
Chain: A, B, C, D, E
 Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Pancreas
symmetry Space Group: P 63 2 2
R_factor 0.190 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
120.480 120.480 111.300 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.58 Å
ligand SO4 enzyme
related structures by homologous chain: 1CBW, 2KAI
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E, B


Primary referenceThe BPTI decamer observed in acidic pH crystal forms pre-exists as a stable species in solution., Hamiaux C, Perez J, Prange T, Veesler S, Ries-Kautt M, Vachette P, J Mol Biol 2000 Mar 31;297(3):697-712. PMID:10731422
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (1bz5.pdb1.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 1BZ5
  • CSU: Contacts of Structural Units for 1BZ5
  • Likely Quarternary Molecular Structure file(s) for 1BZ5
  • Structure Factors (136 Kb)
  • Retrieve 1BZ5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BZ5 from S2C, [Save to disk]
  • Re-refined 1bz5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1BZ5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1BZ5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BZ5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bz5a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1bz5b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1bz5c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1bz5d_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1bz5e_, region E [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bz5_C] [1bz5_A] [1bz5_D] [1bz5] [1bz5_E] [1bz5_B]
  • SWISS-PROT database: [P00974]
  • Domain organization of [BPT1_BOVIN] by SWISSPFAM
  • Domain found in 1BZ5: [KU ] by SMART
    • Other resources with information on 1BZ5
  • Community annotation for 1BZ5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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