1BZO	Oxidoreductase	date	Nov 02, 1998
title	Three-Dimensional Structure Of Prokaryotic Cu,Zn Superoxide From P.Leiognathi, Solved By X-Ray Crystallography.
authors	D.Bordo, D.Matak, K.Djinovic-Carugo, C.Rosano, A.Pesce, M.Bologne M.E.Stroppolo, M.Falconi, A.Battistoni, A.Desideri
compound		source
Molecule: Protein (Superoxide Dismutase) Chain: A Ec: 1.15.1.1 Engineered: Yes		Organism_scientific: Photobacterium Leiognathi Organism_taxid: 658 Cellular_location: Periplasmic Space Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: H 3 2	R_factor R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 86.890 86.890 99.010 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	CU, IUM, ZN	enzyme	Oxidoreductase E.C.1.15.1.1 BRENDA
related structures	by homologous chain: 1IBB, 1IBF
Gene Ontology	Chain Function Process Component A superoxide dismutase activit... antioxidant activity
Primary reference	Evolutionary constraints for dimer formation in prokaryotic Cu,Zn superoxide dismutase., Bordo D, Matak D, Djinovic-Carugo K, Rosano C, Pesce A, Bolognesi M, Stroppolo ME, Falconi M, Battistoni A, Desideri A, J Mol Biol 1999 Jan 8;285(1):283-96. PMID:9878406

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk] Biological Unit Coordinates (1bzo.pdb1.gz) 49 Kb LPC: Ligand-Protein Contacts for 1BZO CSU: Contacts of Structural Units for 1BZO Likely Quarternary Molecular Structure file(s) for 1BZO Structure Factors (65 Kb) Retrieve 1BZO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1BZO from S2C, [Save to disk] Re-refined 1bzo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1BZO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1BZO

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1BZO, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1bzoa_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1bzo_A] [1bzo] SWISS-PROT database: [P00446] Domain organization of [SODC_PHOLE] by SWISSPFAM

Other resources with information on 1BZO

Community annotation for 1BZO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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