1C06 Ribosome date Jul 14, 1999
title Solution Structure Of Ribosomal Protein S4 Delta 41, Refined Dipolar Couplings (Ensemble Of 16 Structures)
authors M.A.Markus, R.B.Gerstner, D.E.Draper, D.A.Torchia
compound source
Molecule: Ribosomal Protein S4 Delta 41
Chain: A
Fragment: S4 Delta 41 (S4 Residues 42-200)
Engineered: Yes
Organism_scientific: Geobacillus Stearothermophilus
Organism_taxid: 1422
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet13a
methodSolution NMR
related structures by homologous chain: 1C05
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRefining the overall structure and subdomain orientation of ribosomal protein S4 delta41 with dipolar couplings measured by NMR in uniaxial liquid crystalline phases., Markus MA, Gerstner RB, Draper DE, Torchia DA, J Mol Biol 1999 Sep 17;292(2):375-87. PMID:10493882
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (790 Kb) [Save to disk]
  • Biological Unit Coordinates (1c06.pdb1.gz) 50 Kb
  • CSU: Contacts of Structural Units for 1C06
  • Original NMR restraints for 1C06 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1C06 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1C06 from S2C, [Save to disk]
  • View 1C06 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1C06
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1C06, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1c06a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1c06] [1c06_A]
  • SWISS-PROT database: [P81288]
  • Domain organization of [RS4_BACST] by SWISSPFAM
  • Domains found in 1C06: [Ribosomal_S4] [S4 ] by SMART
  • Other resources with information on 1C06
  • Community annotation for 1C06 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1C06 from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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