1C08	Immune System Hydrolase	date	Jul 15, 1999
title	Crystal Structure Of Hyhel-10 Fv-Hen Lysozyme Complex
authors	M.Shiroishi, H.Kondo, M.Matsushima, K.Tsumoto, I.Kumagai
compound		source
Molecule: Anti-Hen Egg White Lysozyme Antibody (Hyhel-10) Chain: A Fragment: Vl Fragment Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pktn2
Molecule: Anti-Hen Egg White Lysozyme Antibody (Hyhel-10) Chain: B Fragment: Vh Fragment Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pktn2
Molecule: Lysozyme Chain: C		Organism_scientific: Gallus Gallus Organism_common: Chicken Organism_taxid: 9031
symmetry	Space Group: P 41 21 2	R_factor 0.235 R_Free 0.175
crystal cell	length a length b length c angle alpha angle beta angle gamma 57.208 57.208 236.071 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
related structures	by homologous chain: 1EJO, 1EZV, 1K4D, 1LSG, 1XEK
Gene Ontology	Chain Function Process Component A B C
Primary reference	Crystal structure of anti-Hen egg white lysozyme antibody (HyHEL-10) Fv-antigen complex. Local structural changes in the protein antigen and water-mediated interactions of Fv-antigen and light chain-heavy chain interfaces., Kondo H, Shiroishi M, Matsushima M, Tsumoto K, Kumagai I, J Biol Chem 1999 Sep 24;274(39):27623-31. PMID:10488102

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk] Biological Unit Coordinates (1c08.pdb1.gz) 57 Kb CSU: Contacts of Structural Units for 1C08 Likely Quarternary Molecular Structure file(s) for 1C08 Retrieve 1C08 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1C08 from S2C, [Save to disk]

View 1C08 in 3D

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Visual 3D analysis of 1C08

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1C08, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1c08a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1c08b_, region B [Jmol] [rasmolscript] [script source]     - Domain d1c08c_, region C [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1c08_A] [1c08_C] [1c08_B] [1c08] SWISS-PROT database: [P01823] [P01642] [P00698] Domain organization of [HVM47_MOUSE] [KV5A9_MOUSE] [LYSC_CHICK] by SWISSPFAM Domains found in 1C08: [IGv] [LYZ1 ] by SMART

Other resources with information on 1C08

Community annotation for 1C08 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Domain movements in 1C08 from the Database of Macromolecular Movements. Images from IMB Jena Image Library of Biological Macromolecules.

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