1C7V Metal Binding Protein date Mar 27, 2000
title Nmr Solution Structure Of The Calcium-Bound C-Terminal Domai S161) Of Calcium Vector Protein From Amphioxus
authors I.Theret, S.Baladi, J.A.Cox, H.Sakamoto, C.T.Craescu
compound source
Molecule: Calcium Vector Protein
Chain: A
Fragment: C-Terminal Domain (Residues 81-161)
Synonym: Cavp
Engineered: Yes
 Organism_scientific: Branchiostoma Lanceolatum
Organism_common: Amphioxus
Organism_taxid: 7740
Tissue: Muscle
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet24a
methodSolution NMR
related structures by homologous chain: 1C7W
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSequential calcium binding to the regulatory domain of calcium vector protein reveals functional asymmetry and a novel mode of structural rearrangement., Theret I, Baladi S, Cox JA, Sakamoto H, Craescu CT, Biochemistry 2000 Jul 11;39(27):7920-6. PMID:10891072
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (342 Kb) [Save to disk]
  • Biological Unit Coordinates (1c7v.pdb1.gz) 18 Kb
  • CSU: Contacts of Structural Units for 1C7V
  • Original NMR restraints for 1C7V from PDB
  • Retrieve 1C7V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1C7V from S2C, [Save to disk]
    • View 1C7V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1C7V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1C7V, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1c7va_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1c7v] [1c7v_A]
  • SWISS-PROT database: [P04573]
  • Domain organization of [CAVP_BRALA] by SWISSPFAM
  • Domain found in 1C7V: [EFh ] by SMART
    • Other resources with information on 1C7V
  • Community annotation for 1C7V at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science