1C88 Hydrolase date Apr 16, 2000
title Crystal Structure Of Protein Tyrosine Phosphatase 1b Complex (Oxalyl-Amino)-4,5,6,7-Tetrahydro-Thieno[2,3-C]Pyridine-3-C Acid
authors L.F.Iversen, H.S.Andersen, S.B.Mortensen, N.P.Moller
compound source
Molecule: Protein (Protein-Tyrosine Phosphatase 1b)
Chain: A
Synonym: Ptp1b
Ec: 3.1.3.48
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet11a
symmetry Space Group: P 31 2 1
R_factor 0.200 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.290 88.290 103.750 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand OTA BindingDB enzyme Hydrolase E.C.3.1.3.48 BRENDA
related structures by homologous chain: 1C83, 1OEM
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure-based design of a low molecular weight, nonphosphorus, nonpeptide, and highly selective inhibitor of protein-tyrosine phosphatase 1B., Iversen LF, Andersen HS, Branner S, Mortensen SB, Peters GH, Norris K, Olsen OH, Jeppesen CB, Lundt BF, Ripka W, Moller KB, Moller NP, J Biol Chem 2000 Apr 7;275(14):10300-7. PMID:10744717
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (1c88.pdb1.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 1C88
  • CSU: Contacts of Structural Units for 1C88
  • Likely Quarternary Molecular Structure file(s) for 1C88
  • Retrieve 1C88 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1C88 from S2C, [Save to disk]
  • View 1C88 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1C88
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1C88, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1c88a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1c88] [1c88_A]
  • SWISS-PROT database: [P18031]
  • Domain organization of [PTN1_HUMAN] by SWISSPFAM
  • Domain found in 1C88: [PTPc ] by SMART
  • Other resources with information on 1C88
  • Community annotation for 1C88 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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