1C8C Dna Binding Protein Dna date May 04, 2000
title Crystal Structures Of The Chromosomal Proteins Sso7dsac7d B Dna Containing T-G Mismatched Base Pairs
authors S.Su, Y.G.Gao, H.Robinson, Y.C.Liaw, S.P.Edmondson, J.W.Shriver J.Wang
compound source
Molecule: 5'-D(Gptpgpaptpcpgpc)-3'
Chain: B, C
Engineered: Yes
 Synthetic: Yes

Molecule: Dna-Binding Protein 7a
Chain: A
Synonym: Sso7d, 7 Kda Dna-Binding Protein D
Organism_scientific: Sulfolobus Solfataricus
Organism_taxid: 2287
Atcc: Dsm 1617
Collection: Dsm 1617
Other_details: German Collection Of Microorganisms (Dsm) 16
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.475 49.800 37.681 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.45 Å
related structures by homologous chain: 1WTO, 1XYI
Gene
Ontology
ChainFunctionProcessComponent
A
  • endoribonuclease activity


    • Primary referenceCrystal structures of the chromosomal proteins Sso7d/Sac7d bound to DNA containing T-G mismatched base-pairs., Su S, Gao YG, Robinson H, Liaw YC, Edmondson SP, Shriver JW, Wang AH, J Mol Biol 2000 Oct 27;303(3):395-403. PMID:11031116
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (1c8c.pdb1.gz) 28 Kb
  • CSU: Contacts of Structural Units for 1C8C
  • Likely Quarternary Molecular Structure file(s) for 1C8C
  • Structure Factors (93 Kb)
  • Retrieve 1C8C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1C8C from S2C, [Save to disk]
  • Re-refined 1c8c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1C8C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1C8C
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1C8C 1C8CA 1C8CB 1C8CC from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1C8C, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1c8ca_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1c8c_C] [1c8c_B] [1c8c_A] [1c8c]
  • SWISS-PROT database: [P39476]
  • Domain organization of [DN72_SULSO] by SWISSPFAM
    • Other resources with information on 1C8C
  • Community annotation for 1C8C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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