1C9S Rna Binding Protein Rna date Aug 03, 1999
title Crystal Structure Of A Complex Of Trp Rna-Binding Attenuatio With A 53-Base Single Stranded Rna Containing Eleven Gag Tr Separated By Au Dinucleotides
authors A.A.Antson, E.J.Dodson, G.G.Dodson, R.B.Greaves, X.P.Chen, P.Gol
compound source
Molecule: Single Stranded Rna (55-Mer)
Chain: W
Engineered: Yes
Synthetic: Yes
Other_details: In-Vitro Transcription

Molecule: Trp Rna-Binding Attenuation Protein
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R V;
Engineered: Yes

Organism_scientific: Geobacillus Stearothermophilus
Organism_taxid: 1422
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Sg62052pgp1-2
Expression_system_plasmid: Ptzstmtrb
symmetry Space Group: C 1 2 1
R_factor 0.188 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
150.970 111.670 138.680 90.00 117.77 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand TRP enzyme
related structures by homologous chain: 1UTD, 1UTV
Gene
Ontology
ChainFunctionProcessComponent
S, F, T, N, K, E, V, Q, M, C, L, A, J, O, P, B, H, D, R, I, G, U


Primary referenceStructure of the trp RNA-binding attenuation protein, TRAP, bound to RNA., Antson AA, Dodson EJ, Dodson G, Greaves RB, Chen X, Gollnick P, Nature 1999 Sep 16;401(6750):235-42. PMID:10499579
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (295 Kb) [Save to disk]
  • Biological Unit Coordinates (1c9s.pdb1.gz) 136 Kb
  • Biological Unit Coordinates (1c9s.pdb2.gz) 157 Kb
  • LPC: Ligand-Protein Contacts for 1C9S
  • CSU: Contacts of Structural Units for 1C9S
  • Likely Quarternary Molecular Structure file(s) for 1C9S
  • Structure Factors (1462 Kb)
  • Retrieve 1C9S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1C9S from S2C, [Save to disk]
  • Re-refined 1c9s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1C9S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1C9S
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1C9S, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1c9sa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1c9sb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1c9sc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1c9sd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1c9se_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1c9sf_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1c9sg_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1c9sh_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1c9si_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1c9sj_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1c9sk_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1c9sl_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1c9sm_, region M [Jmol] [rasmolscript] [script source]
        - Domain d1c9sn_, region N [Jmol] [rasmolscript] [script source]
        - Domain d1c9so_, region O [Jmol] [rasmolscript] [script source]
        - Domain d1c9sp_, region P [Jmol] [rasmolscript] [script source]
        - Domain d1c9sq_, region Q [Jmol] [rasmolscript] [script source]
        - Domain d1c9sr_, region R [Jmol] [rasmolscript] [script source]
        - Domain d1c9ss_, region S [Jmol] [rasmolscript] [script source]
        - Domain d1c9st_, region T [Jmol] [rasmolscript] [script source]
        - Domain d1c9su_, region U [Jmol] [rasmolscript] [script source]
        - Domain d1c9sv_, region V [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1c9s_B] [1c9s_V] [1c9s_S] [1c9s_D] [1c9s_P] [1c9s_A] [1c9s_Q] [1c9s_E] [1c9s_H] [1c9s_K] [1c9s_C] [1c9s_G] [1c9s_M] [1c9s_U] [1c9s_T] [1c9s_W] [1c9s_R] [1c9s_F] [1c9s_O] [1c9s] [1c9s_L] [1c9s_I] [1c9s_J] [1c9s_N]
  • SWISS-PROT database: [Q9X6J6]
  • Domain organization of [MTRB_BACST] by SWISSPFAM
  • Other resources with information on 1C9S
  • Community annotation for 1C9S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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