1CB9 Toxin date Mar 01, 1999
title Nmr Structure With Tightly Bound Water Molecules Of Cytotoxi (Cardiotoxin) From Naja Naja Oxiana In Aqueous Solution (Ma
authors D.V.Dementieva, E.V.Bocharov, A.S.Arseniev
compound source
Molecule: Protein (Cytotoxin 2)
Chain: A
 Organism_scientific: Naja Oxiana
Organism_common: Central Asian Cobra
Organism_taxid: 8657
Secretion: Venom
methodSolution NMR
related structures by homologous chain: 1CCQ, 2CCX
Gene
Ontology
ChainFunctionProcessComponent
A
  • toxin activity


    • Primary referenceTwo forms of cytotoxin II (cardiotoxin) from Naja naja oxiana in aqueous solution: spatial structures with tightly bound water molecules., Dementieva DV, Bocharov EV, Arseniev AS, Eur J Biochem 1999 Jul;263(1):152-62. PMID:10429199
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (310 Kb) [Save to disk]
  • Biological Unit Coordinates (1cb9.pdb1.gz) 16 Kb
  • CSU: Contacts of Structural Units for 1CB9
  • Original NMR restraints for 1CB9 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1CB9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CB9 from S2C, [Save to disk]
    • View 1CB9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1CB9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1CB9, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1cb9a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1cb9_A] [1cb9]
  • SWISS-PROT database: [P01441]
  • Domain organization of [CX2_NAJOX] by SWISSPFAM
    • Other resources with information on 1CB9
  • Community annotation for 1CB9 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science