1CBG Hydrolase (O-Glycosyl) date Jul 31, 1995
title The Crystal Structure Of A Cyanogenic Beta-Glucosidase From Clover (Trifolium Repens L.), A Family 1 Glycosyl-Hydrolase
authors T.E.Barrett, C.G.Suresh, S.P.Tolley, M.A.Hughes
compound source
Molecule: Cyanogenic Beta-Glucosidase
Chain: A
Ec: 3.2.1.21
Organism_scientific: Trifolium Repens
Organism_common: White Clover
Organism_taxid: 3899
Variant: L
Organ: Leaves
Tissue: Leaves
symmetry Space Group: P 41 21 2
R_factor 0.195 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.326 70.326 249.096 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand
enzyme Hydrolase E.C.3.2.1.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe crystal structure of a cyanogenic beta-glucosidase from white clover, a family 1 glycosyl hydrolase., Barrett T, Suresh CG, Tolley SP, Dodson EJ, Hughes MA, Structure 1995 Sep 15;3(9):951-60. PMID:8535788
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (1cbg.pdb1.gz) 175 Kb
  • CSU: Contacts of Structural Units for 1CBG
  • Likely Quarternary Molecular Structure file(s) for 1CBG
  • Retrieve 1CBG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CBG from S2C, [Save to disk]
  • View 1CBG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1CBG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1CBG, from MSDmotif at EBI
  • Genome occurence of 1CBG's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1cbg__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1cbg_A] [1cbg]
  • SWISS-PROT database: [P26205]
  • Domain organization of [BGLT_TRIRP] by SWISSPFAM
  • Other resources with information on 1CBG
  • Community annotation for 1CBG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1CBG from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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